5L3M
D11 bound [S39_PQ]-IGF-II
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
2 | 3D CBCA(CO)NH | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
3 | 3D HNCACB | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
4 | 3D HNCO | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
5 | 3D HN(CA)CO | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
8 | 3D HCCH-TOCSY | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
7 | 3D 1H-15N NOESY | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 850 |
6 | 3D 1H-13C NOESY | 20 mM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 850 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | YASARA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | refinement | YASARA | Hoegenauer, Koraimann, Kungl, Vriend |