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Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M HEPES, PH7.3, 0.1MKSCN, 25-30%MPEG2000
Crystal Properties Matthews coefficient Solvent content 1.87 34.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.236 α = 90 b = 76.836 β = 90 c = 76.847 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2013-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 48.33 99.7 17.7 5.9 268230
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.57 48.33 34914 1817 99.84 0.17623 0.17425 0.21551 0.2138 RANDOM 30.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.3 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.824 r_dihedral_angle_4_deg 16.877 r_dihedral_angle_3_deg 13.524 r_long_range_B_other 7.359 r_long_range_B_refined 7.309 r_dihedral_angle_1_deg 5.444 r_scbond_it 3.126 r_scbond_other 3.124 r_mcbond_it 2.19 r_mcbond_other 2.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.824 r_dihedral_angle_4_deg 16.877 r_dihedral_angle_3_deg 13.524 r_long_range_B_other 7.359 r_long_range_B_refined 7.309 r_dihedral_angle_1_deg 5.444 r_scbond_it 3.126 r_scbond_other 3.124 r_mcbond_it 2.19 r_mcbond_other 2.163 r_angle_refined_deg 1.54 r_angle_other_deg 0.944 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_bond_other_d 0.002 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1814 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing