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R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5AOZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 292 0.2 M ammonium nitrate, 20% w/v PEG 3550
Crystal Properties Matthews coefficient Solvent content 2.19 43.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.767 α = 90 b = 63.51 β = 90 c = 84.482 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 20.27 99.6 0.243 0.261 0.094 0.976 5.7 7.4 62659
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.26 1.29 97.9 0.631 0.775 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5aoz 1.26 20.27 59348 3171 99.39 0.1356 0.1346 0.1345 0.1535 0.1303 RANDOM 8.919
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 0.56 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.957 r_sphericity_free 28.873 r_dihedral_angle_3_deg 9.836 r_dihedral_angle_4_deg 9.092 r_sphericity_bonded 7.13 r_dihedral_angle_1_deg 6.595 r_rigid_bond_restr 2.475 r_angle_refined_deg 1.485 r_mcangle_it 0.919 r_angle_other_deg 0.805
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.957 r_sphericity_free 28.873 r_dihedral_angle_3_deg 9.836 r_dihedral_angle_4_deg 9.092 r_sphericity_bonded 7.13 r_dihedral_angle_1_deg 6.595 r_rigid_bond_restr 2.475 r_angle_refined_deg 1.485 r_mcangle_it 0.919 r_angle_other_deg 0.805 r_mcbond_it 0.74 r_mcbond_other 0.646 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1582 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 2
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction PHASER phasing