5MPG

Solution NMR structure of hnRNP A1 RRM1 in complex with 5'-UUAGGUC-3' RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.0 mM [U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 600
22D 1H-13C HSQC aliphatic1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC100% D2O10 mM6.51 atm303Bruker AVANCE 900
32D 1H-13C HSQC aromatic1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC100% D2O10 mM6.51 atm303Bruker AVANCE III 750
43D HNCA1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 500
53D HNCACB1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 500
63D CBCA(CO)NH1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 500
73D HNCO1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 500
83D HCc(CO)NH TOCSY1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 700
93D hCC(CO)NH TOCSY1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE III 700
103D 1H-15N NOESY1.0 mM [U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE 900
113D 1H-13C NOESY aliphatic1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE 900
183D 1H-13C NOESY aromatic1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC90% H2O/10% D2O10 mM6.51 atm303Bruker AVANCE 900
172D 1H-1H NOESY1.0 mM [U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC100% D2O10 mM6.51 atm303Bruker AVANCE 900
162D 1H-1H TOCSY1.0 mM [U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC100% D2O10 mM6.51 atm303Bruker AVANCE 900
152D F1fF2f 13C-filtered NOESY1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC100% D2O10 mM6.51 atm303Bruker AVANCE III 700
143D F1eF3f 13C-filtered/edited NOESY1.0 mM [U-99% 13C; U-99% 15N] hnRNP A1 RRM1, 1.0 mM RNA UUAGGUC100% D2O10 mM6.51 atm303Bruker AVANCE III 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III500
2BrukerAVANCE III600
3BrukerAVANCE III700
4BrukerAVANCE III750
5BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model15 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingTopSpinBruker Biospin
3chemical shift assignmentSparkyGoddard
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
6data analysisPROCHECK / PROCHECK-NMRLaskowski and MacArthur