5MTN

Monobody Mb(Lck_1) bound to Lck-Sh2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2910,2M Lithium sulfate / 0.1M TRIS pH8.5 / 10% PEG8K + 10%PEG1K
Crystal Properties
Matthews coefficientSolvent content
5.3276.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.397α = 90
b = 91.397β = 90
c = 88.778γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M-F2016-10-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8545.710023.795.510316

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.8545.71031654499.90.229440.227510.26503RANDOM78.567
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.04-0.02-0.040.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.317
r_dihedral_angle_4_deg27.515
r_dihedral_angle_3_deg20.283
r_long_range_B_refined7.247
r_long_range_B_other7.245
r_dihedral_angle_1_deg6.396
r_mcangle_it4.703
r_mcangle_other4.701
r_scangle_other4.307
r_mcbond_it2.795
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.317
r_dihedral_angle_4_deg27.515
r_dihedral_angle_3_deg20.283
r_long_range_B_refined7.247
r_long_range_B_other7.245
r_dihedral_angle_1_deg6.396
r_mcangle_it4.703
r_mcangle_other4.701
r_scangle_other4.307
r_mcbond_it2.795
r_mcbond_other2.795
r_scbond_it2.644
r_scbond_other2.599
r_angle_refined_deg1.317
r_angle_other_deg0.938
r_chiral_restr0.068
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1424
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing