5MWV
Solid-state NMR Structure of outer membrane protein G in lipid bilayers
SOLID-STATE NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D (H)N(HH)NH RFDR 2ms | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G, 0.33 w/w lipids | MES Buffer | 50 mM NaCl mM | 6.3 | 1 atm | 280 | Bruker AVANCE 1000 |
2 | 3D (H)NHH RFDR 2ms | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G, 0.33 w/w lipids | MES Buffer | 50 mM NaCl mM | 6.3 | 1 atm | 280 | Bruker AVANCE 1000 |
3 | 2D 13C-13C DARR 200ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
4 | 2D 13C-13C DARR 400ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
5 | 2D 13C-13C DARR 200ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
6 | 2D 13C-13C DARR 400ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
8 | 2D 13C-13C DARR 150ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
7 | 2D 13C-13C DARR 400ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
9 | 2D 13C-13C DARR 150ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
10 | 2D 13C-13C DARR 400ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
11 | 2D 13C-13C DARR 150ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w na lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
12 | 2D 13C-13C DARR 400ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w na lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
13 | 2D 13C-13C DARR 500ms | 0.66 w/w [U-15N; U-1H] Outer Membrane Protein G, 0.33 w/w lipids | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 900 |
14 | 3D (H)CANH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G, 0.33 w/w lipids | MES Buffer | 50 mM NaCl mM | 6.3 | 1 atm | 280 | Bruker AVANCE 1000 |
15 | 3D (H)CANH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 800 |
16 | 3D (HCO)CA(CO)NH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 800 |
17 | 3D (HCA)CB(CA)NH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 800 |
18 | 3D (HCA)CBCA(CO)NH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 800 |
19 | 3D (H)CONH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 800 |
20 | 3D (H)CO(CA)NH | 0.66 w/w [U-13C; U-15N; U-2H] backexchanged 1H Outer Membrane Protein G | HEPES Buffer | 50 mM NaCl mM | 6.8 | 1 atm | 280 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 1000 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. | |
2 | structure calculation | ARIA | 1.21 | Linge, O'Donoghue and Nilges |
3 | chemical shift assignment | CcpNmr Analysis | 2.4 | CCPN |
4 | peak picking | CcpNmr Analysis | 2.4 | CCPN |
5 | data analysis | TALOS | TALOS+ | Cornilescu, Delaglio and Bax |