5N14

NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 950
22D 1H-13C HSQC3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 950
32D 1H-1H TOCSY3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 950
42D 1H-1H NOESY3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 950
72D 1H-1H COSY3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 950
62D 1H-1H TOCSY3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 800
52D 1H-15N HSQC3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 800
82D 1H-13C HSQC3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 800
92D 1H-1H NOESY3.2 mM CL11290% H2O/10% D2O0.1 M6.51 atm298Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III950
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentSparky12Goddard
5structure calculationAmber12Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2refinementUCSF ChimeraPettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin
4processingTopSpinBruker Biospin