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Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.415 r_long_range_B_refined 23.437 r_long_range_B_other 23.437 r_dihedral_angle_3_deg 14.806 r_scangle_other 14.522 r_mcangle_it 13.025 r_mcangle_other 13.025 r_dihedral_angle_4_deg 11.811 r_scbond_it 7.906 r_scbond_other 7.906
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.415 r_long_range_B_refined 23.437 r_long_range_B_other 23.437 r_dihedral_angle_3_deg 14.806 r_scangle_other 14.522 r_mcangle_it 13.025 r_mcangle_other 13.025 r_dihedral_angle_4_deg 11.811 r_scbond_it 7.906 r_scbond_other 7.906 r_mcbond_it 7.438 r_mcbond_other 7.438 r_dihedral_angle_1_deg 5.677 r_angle_refined_deg 1.301 r_angle_other_deg 0.915 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 233227 Reported Resolution (Å) 3.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 145 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 1.6
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 5000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 59000 Calibrated Magnification 106061 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch 0.53 IMAGE ACQUISITION EPU CTF CORRECTION Gctf 1.06 MODEL FITTING Coot 0.83 INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT RELION 1.4 CLASSIFICATION RELION 1.4 RECONSTRUCTION RELION 1.4 MODEL REFINEMENT REFMAC 5.8.0166
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1 Negative stain dataset was processed to generate templates.