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Protocadherin Gamma A4 extracellular cadherin domains 3-6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5SZM EC3-4 of 5SZM, EC5 of 5SZN and EC6 of 5SZR experimental model PDB 5SZN EC3-4 of 5SZM, EC5 of 5SZN and EC6 of 5SZR experimental model PDB 5SZR EC3-4 of 5SZM, EC5 of 5SZN and EC6 of 5SZR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 8.5 295 0.1 M ammonium sulfate, 9% (w/v) PEG20000, 18% PEG550MME, 0.1 M Morpheus Buffer System 3 (Tris/Bicine; Molecular Dimensions) pH 8.5
Crystal Properties Matthews coefficient Solvent content 3.63 66.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.89 α = 90 b = 63.64 β = 90 c = 344.31 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97919 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.56 172.16 99.3 0.112 0.998 6.6 4.1 23763 48.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.56 2.67 97.5 3.118 0.434 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE EC3-4 of 5SZM, EC5 of 5SZN and EC6 of 5SZR 2.608 19.957 1.36 11652 554 51.73 0.2522 0.2506 0.2581 0.282 0.2855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.093 f_angle_d 0.658 f_chiral_restr 0.048 f_plane_restr 0.005 f_bond_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3189 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 117
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHASER phasing