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LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (pH 7.5) AND 0.15 M NACL.
PRECIPITANT: 12% (W/W) PEG8000, 8% (W/V) ETHYLENE GLYCOL, 0.1 M HEPES (pH 7.5).PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (pH 7.5) AND 0.15 M NACL.
PRECIPITANT: 12% (W/W) PEG8000, 8% (W/V) ETHYLENE GLYCOL, 0.1 M HEPES (pH 7.5).
DROPLETS RATIO: 1:1
DROPLETS RATIO: 1:1
Crystal Properties Matthews coefficient Solvent content 2.1 41.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.378 α = 90 b = 46.159 β = 92.56 c = 92.107 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2016-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 40 99.9 0.074 0.079 0.027 9 7.9 100009
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 99.6 0.723 0.794 0.322 0.761 5.7 4951
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.35 32.586 93776 2927 96.17 0.1064 0.1053 0.1046 0.1407 0.1408 RANDOM 18.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.05 -0.62 0.91
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.417 r_dihedral_angle_2_deg 35.117 r_dihedral_angle_4_deg 17.31 r_sphericity_bonded 14.413 r_dihedral_angle_3_deg 13.349 r_dihedral_angle_1_deg 7.089 r_rigid_bond_restr 5.828 r_mcangle_it 2.158 r_angle_other_deg 2.135 r_angle_refined_deg 2.062
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.417 r_dihedral_angle_2_deg 35.117 r_dihedral_angle_4_deg 17.31 r_sphericity_bonded 14.413 r_dihedral_angle_3_deg 13.349 r_dihedral_angle_1_deg 7.089 r_rigid_bond_restr 5.828 r_mcangle_it 2.158 r_angle_other_deg 2.135 r_angle_refined_deg 2.062 r_mcbond_it 1.951 r_mcbond_other 1.937 r_chiral_restr 0.153 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3671 Nucleic Acid Atoms Solvent Atoms 487 Heterogen Atoms 60
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction PHASER phasing