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LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (pH 7.5) AND 0.15 M NACL, PRECIPITANT: 24% (W/W) PEG1500, 0.2 M L-PROLINE, 0.1 M HEPES (pH 7.5), DROPLETS RATIO: 1:1
Crystal Properties Matthews coefficient Solvent content 2.85 56.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.081 α = 90 b = 187.29 β = 90 c = 258.387 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2015-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 50 98.4 0.113 0.124 0.05 5.5 5.7 85387
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.8 88.8 0.864 0.814 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.75 49.384 67604 3493 79.7 0.2028 0.2014 0.2031 0.2296 0.2307 RANDOM 58.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 2.13 -3.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.245 r_dihedral_angle_3_deg 14.723 r_dihedral_angle_4_deg 8.408 r_dihedral_angle_1_deg 7.763 r_angle_refined_deg 1.854 r_angle_other_deg 1.239 r_mcangle_it 0.479 r_mcbond_it 0.264 r_mcbond_other 0.264 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.245 r_dihedral_angle_3_deg 14.723 r_dihedral_angle_4_deg 8.408 r_dihedral_angle_1_deg 7.763 r_angle_refined_deg 1.854 r_angle_other_deg 1.239 r_mcangle_it 0.479 r_mcbond_it 0.264 r_mcbond_other 0.264 r_chiral_restr 0.1 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18430 Nucleic Acid Atoms Solvent Atoms 213 Heterogen Atoms 160
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction PHASER phasing