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LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C8C PDB ENTRY 3C8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 5 293.5 Capillary COUNTER-DIFFUSION:
2.8 M AMMONIUM SULPHATE, 0.1M SODIUM ACETATE pH 5.0, T 20 C
Crystal Properties Matthews coefficient Solvent content 3.6 66.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.61 α = 90 b = 132.61 β = 90 c = 77.09 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M MIRRORS 2012-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9801 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 33.153 100 0.06 0.999 20.99 7 39288 2 38.91
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 100 0.54 0.866 3.32 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 3C8C 2.2 33.153 1.34 39271 1973 99.94 0.1681 0.1663 0.1724 0.2038 0.2047 Random selection 48.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.38 f_angle_d 1.162 f_chiral_restr 0.051 f_bond_d 0.01 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3668 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 31
Software Software Software Name Purpose XDS data reduction SCALA data scaling PHASER phasing PHENIX refinement