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Crystal structure of 2-methylcitrate synthase from Aspergillus fumigatus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.15 M DL-Malic Acid pH 7.0, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.1 41.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.724 α = 90 b = 94.11 β = 90 c = 124.404 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 40 98.12 0.078 0.078 0.104 0.041 16.4 5.7 77525 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 91.6 0.529 0.529 0.634 0.303 0.722 2.33 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 31.11 77525 4085 98.12 0.14372 0.14204 0.1564 0.17529 0.1886 RANDOM 17.701
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 0.36 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.029 r_dihedral_angle_4_deg 14.708 r_dihedral_angle_3_deg 12.827 r_dihedral_angle_1_deg 5.344 r_long_range_B_refined 4.653 r_long_range_B_other 4.653 r_angle_other_deg 3.585 r_scangle_other 1.915 r_angle_refined_deg 1.498 r_mcangle_it 1.434
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.029 r_dihedral_angle_4_deg 14.708 r_dihedral_angle_3_deg 12.827 r_dihedral_angle_1_deg 5.344 r_long_range_B_refined 4.653 r_long_range_B_other 4.653 r_angle_other_deg 3.585 r_scangle_other 1.915 r_angle_refined_deg 1.498 r_mcangle_it 1.434 r_mcangle_other 1.434 r_scbond_it 1.126 r_scbond_other 1.126 r_mcbond_it 0.831 r_mcbond_other 0.831 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6802 Nucleic Acid Atoms Solvent Atoms 1288 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-3000 phasing MOLREP phasing