5UVK

Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4ZIZ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE727775 mM HEPES pH 7, 20 mM MgCl2, 9 % PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.6854.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 186.4α = 90
b = 186.4β = 90
c = 60.3γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS3 6M2016-08-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.03APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.150.0199.70.9867.6156.46280
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.180.799

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4ZIZ3.150.016280108299.690.177230.172480.20474RANDOM48.046
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.72-0.36-0.722.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.345
r_dihedral_angle_4_deg15.188
r_dihedral_angle_3_deg14.375
r_long_range_B_refined7.711
r_long_range_B_other7.711
r_scangle_other5.056
r_dihedral_angle_1_deg5.012
r_mcangle_it3.765
r_mcangle_other3.764
r_scbond_it3.094
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.345
r_dihedral_angle_4_deg15.188
r_dihedral_angle_3_deg14.375
r_long_range_B_refined7.711
r_long_range_B_other7.711
r_scangle_other5.056
r_dihedral_angle_1_deg5.012
r_mcangle_it3.765
r_mcangle_other3.764
r_scbond_it3.094
r_scbond_other3.093
r_mcbond_it2.362
r_mcbond_other2.362
r_angle_refined_deg2.093
r_angle_other_deg1.058
r_chiral_restr0.073
r_gen_planes_other0.015
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_bond_other_d0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2497
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms129

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata scaling
CrystFELdata reduction
MOLREPphasing
Cheetahdata collection