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Coordination Chemistry within a Protein Host: Regulation of the Secondary Coordination Sphere
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 295 26 mg/mL protein, 2.0 M ammonium sulfate, 0.1 M sodium acetate, pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.33 47.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.875 α = 90 b = 57.875 β = 90 c = 184.424 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 37.4 99.5 22.2 11.1 33187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.4 90.8 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.37 37.4 31548 1558 99.38 0.16481 0.16372 0.1722 0.18737 0.1977 RANDOM 20.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.1 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.04 r_dihedral_angle_4_deg 14.626 r_dihedral_angle_3_deg 13.769 r_long_range_B_refined 10.656 r_long_range_B_other 10.652 r_dihedral_angle_1_deg 8.083 r_scangle_other 4.922 r_mcangle_other 3.618 r_mcangle_it 3.605 r_scbond_it 3.522
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.04 r_dihedral_angle_4_deg 14.626 r_dihedral_angle_3_deg 13.769 r_long_range_B_refined 10.656 r_long_range_B_other 10.652 r_dihedral_angle_1_deg 8.083 r_scangle_other 4.922 r_mcangle_other 3.618 r_mcangle_it 3.605 r_scbond_it 3.522 r_scbond_other 3.513 r_angle_refined_deg 2.866 r_mcbond_it 2.387 r_mcbond_other 2.377 r_angle_other_deg 2.06 r_chiral_restr 0.201 r_bond_refined_d 0.031 r_gen_planes_refined 0.016 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 924 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing