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CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F5V PDB ENTRIES 3F5V, 3RVV experimental model PDB 3RVV PDB ENTRIES 3F5V, 3RVV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 293 0.1M NA CACODYLATE, 15% W/V PEG4000,
PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.25 45.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.803 α = 90 b = 61.764 β = 90 c = 223.771 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS 2009-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 92.9 0.086 0.086 26 6.8 47483 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 89.5 0.535 0.535 3.7 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 3F5V, 3RVV 1.95 45.5 45003 2401 92.7 0.158 0.156 0.1624 0.199 0.206 RANDOM 28.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.5 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.948 r_dihedral_angle_4_deg 18.833 r_dihedral_angle_3_deg 14.362 r_dihedral_angle_1_deg 6.822 r_scangle_it 4.288 r_scbond_it 2.727 r_angle_other_deg 2.283 r_angle_refined_deg 1.58 r_mcangle_it 1.519 r_mcbond_it 0.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.948 r_dihedral_angle_4_deg 18.833 r_dihedral_angle_3_deg 14.362 r_dihedral_angle_1_deg 6.822 r_scangle_it 4.288 r_scbond_it 2.727 r_angle_other_deg 2.283 r_angle_refined_deg 1.58 r_mcangle_it 1.519 r_mcbond_it 0.829 r_mcbond_other 0.127 r_chiral_restr 0.101 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.006 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5085 Nucleic Acid Atoms Solvent Atoms 429 Heterogen Atoms 47
Software Software Software Name Purpose HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing MOLREP phasing REFMAC refinement