5X4F

Solution Structure of the N-terminal Domain of TDP-43


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
23D CBCA(CO)NH1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
33D HNCO1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
43D HNCACB1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
53D HNHA1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
93D 1H-15N NOESY1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
83D HCCH-TOCSY1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
73D C(CO)NH1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
63D 1H-13C NOESY aliphatic1 mM U-99% 13C; U-99% 15N TDP(1-77)-GB1-C39/C50S, 20 mM sodium phosphate, 50 mM sodium chloride, 0.05 v/v sodium azide, 90 % H2O, 10 % D2O90% H2O/10% D2O0.08 M6.51 atm298Bruker AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisSparkyGoddard
3structure calculationCNSBrunger, Adams, Clore, Gros, Nilges and Read
4structure calculationARIALinge, O'Donoghue and Nilges
5structure calculationMOLMOLKoradi, Billeter and Wuthrich
6collectionTopSpinBruker Biospin