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Human chymase in complex with 3-(ethoxyimino)-7-oxo-1,4-diazepane derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 22% PEG8000, 5mM zinc chloride and 100mM MES buffer
Crystal Properties Matthews coefficient Solvent content 2.8 56.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.089 α = 90 b = 75.089 β = 90 c = 49.75 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-002 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 100 96.3 14.3 5.3 24820
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 23.61 23543 1262 95.99 0.15658 0.15504 0.1523 0.18525 0.181 RANDOM 22.616
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.38 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.735 r_dihedral_angle_4_deg 18.38 r_dihedral_angle_3_deg 15.027 r_dihedral_angle_1_deg 6.423 r_long_range_B_refined 5.272 r_long_range_B_other 5.261 r_scangle_other 3.916 r_angle_other_deg 2.744 r_scbond_it 2.555 r_scbond_other 2.551
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.735 r_dihedral_angle_4_deg 18.38 r_dihedral_angle_3_deg 15.027 r_dihedral_angle_1_deg 6.423 r_long_range_B_refined 5.272 r_long_range_B_other 5.261 r_scangle_other 3.916 r_angle_other_deg 2.744 r_scbond_it 2.555 r_scbond_other 2.551 r_angle_refined_deg 2.486 r_mcangle_it 2.292 r_mcangle_other 2.291 r_mcbond_other 1.529 r_mcbond_it 1.528 r_chiral_restr 0.182 r_bond_refined_d 0.033 r_gen_planes_refined 0.016 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1709 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing