5Z5W
VFR12 in complex with LPS micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.5 mM Thrombin C-terminal Peptide | 90% H2O/10% D2O | 0 mM | 4.5 | 1 mmHg | 298 | Bruker DRX 600 |
2 | 2D 1H-1H NOESY | 0.5 mM Thrombin C-terminal Peptide | 90% H2O/10% D2O | 0 mM | 4.5 | 1 mmHg | 298 | Bruker DRX 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | peak picking | Sparky | Goddard | |
3 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
4 | processing | TopSpin | Bruker Biospin | |
5 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |