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UDP Glucose alpha tetrahydrobiopterin glycosyltransferase from Synechococcus species PCC 7942 - UDP complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 Bis-tris, PEG3350, Galactose
Crystal Properties Matthews coefficient Solvent content 2.37 48.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.81 α = 90 b = 78.698 β = 90.87 c = 53.605 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.979,0.979,0.987 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 50 99.9 10 3.8 46172
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.07
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.03 29.01 43674 2295 99.36 0.1854 0.18281 0.1899 0.23536 0.2407 RANDOM 40.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.14 0.1 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.534 r_dihedral_angle_4_deg 17.775 r_dihedral_angle_3_deg 16.371 r_long_range_B_refined 9.694 r_long_range_B_other 9.693 r_dihedral_angle_1_deg 7.053 r_scangle_other 6.704 r_mcangle_other 5.698 r_mcangle_it 5.696 r_scbond_it 4.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.534 r_dihedral_angle_4_deg 17.775 r_dihedral_angle_3_deg 16.371 r_long_range_B_refined 9.694 r_long_range_B_other 9.693 r_dihedral_angle_1_deg 7.053 r_scangle_other 6.704 r_mcangle_other 5.698 r_mcangle_it 5.696 r_scbond_it 4.391 r_scbond_other 4.388 r_mcbond_it 3.704 r_mcbond_other 3.697 r_angle_refined_deg 1.925 r_angle_other_deg 1.131 r_chiral_restr 0.111 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5361 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing