6BA3
NMR structure of U21-hexatoxin-Hi1a toxin from Australian Funnel-web spider Hadronyche infensa
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 600 |
2 | 3D HNCO | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 600 |
3 | 3D HNCACB | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 600 |
4 | 3D CBCA(CO)NH | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 600 |
5 | 3D HBHA(CO)NH | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 900 |
8 | 3D 1H-13C NOESY aliphatic | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 900 |
7 | 3D 1H-13C NOESY aromatic | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 900 |
6 | 3D 1H-15N NOESY | 20 mM Sodium citrate, 5 % D2O, 300 uM [U-99% 13C; U-99% 15N] sf26 | 95% H2O/5% D2O | 20 mM | 4 | 1 atm | 298 | Bruker AVANCE II 900 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 600 |
2 | Bruker | AVANCE II | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | Cyana target function and stereochemical properties by Molprobity |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Analysis | CCPN | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | collection | TopSpin | Bruker Biospin | |
5 | peak picking | Analysis | CCPN | |
6 | processing | TopSpin | Bruker Biospin | |
7 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
8 | processing | Rowland_NMR_Toolkit | For processing NUS data | |
2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |