NMR Structural and biophysical functional analysis of intracellular loop 5 of the NHE1 isoform of the Na+/H+ exchanger.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 1D Proton | 5 mM peptide | 90% H2O/10% D2O | 440 mM | 6 | 960 mbar | 300 | Varian VNMRS 600 |
| 2 | 2D NOESY | 5 mM peptide | 90% H2O/10% D2O | 440 mM | 6 | 960 mbar | 300 | Varian VNMRS 600 |
| 3 | 2D HSQC | 5 mM peptide | 90% H2O/10% D2O | 440 mM | 6 | 960 mbar | 300 | Varian VNMRS 600 |
| 4 | 2D TOCSY | 5 mM peptide | 90% H2O/10% D2O | 440 mM | 6 | 960 mbar | 300 | Varian VNMRS 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | VNMRS | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | automatic | CYANA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VnmrJ | 4.2 | Agilent |
| 5 | processing | NMRPipe | 8.9 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 6 | peak picking | NMRView | Johnson, One Moon Scientific | |
| 2 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |














