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Horse liver E267H alcohol dehydrogenase complex with 3'-dephosphocoenzyme A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QLH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 8.4 278 10 mg/ml protein dialyzed against 50 mM tris(hydroxymethyl)aminomethane-HCl, 0.25 mM EDTA, with methylpentanediol increasing to 25 %.
Crystal Properties Matthews coefficient Solvent content 2.3 46.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.21 α = 90 b = 73.08 β = 90 c = 181.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9537 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 20 96.6 0.096 0.105 0.042 7.6 6.24 191863 18.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.26 1.31 99.9 0.635 0.691 0.269 0.49 2.1 6.58
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QLH 1.26 20 189852 1951 96.61 0.1727 0.1724 0.1724 0.208 0.2078 RANDOM 18.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 1.4 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.09 r_sphericity_free 17.901 r_dihedral_angle_4_deg 17.613 r_dihedral_angle_3_deg 12.298 r_dihedral_angle_1_deg 6.441 r_sphericity_bonded 5.929 r_rigid_bond_restr 2.865 r_angle_refined_deg 1.972 r_angle_other_deg 1.056 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.09 r_sphericity_free 17.901 r_dihedral_angle_4_deg 17.613 r_dihedral_angle_3_deg 12.298 r_dihedral_angle_1_deg 6.441 r_sphericity_bonded 5.929 r_rigid_bond_restr 2.865 r_angle_refined_deg 1.972 r_angle_other_deg 1.056 r_chiral_restr 0.113 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5572 Nucleic Acid Atoms Solvent Atoms 553 Heterogen Atoms 140
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction AMoRE phasing