Direct Activation of the Executioner Domain of MLKL by a Select Repertoire of Inositol Phosphates
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE II 600 |
| 2 | 3D 1H-15N NOESY | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE III 800 |
| 3 | 3D 1H-13C NOESY aliphatic | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE III 800 |
| 4 | 3D 1H-13C NOESY aromatic | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE III 800 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 600 |
| 2 | Bruker | AVANCE III | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | CYANA | |
| simulated annealing | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 2 | chemical shift assignment | CARA | 1.9 | Keller and Wuthrich |
| 3 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 4 | peak picking | CARA | 1.9 | Keller and Wuthrich |
| 5 | collection | TopSpin | 3.5 | Bruker Biospin |
| 6 | refinement | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 7 | geometry optimization | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
