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Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 JCSG Plus screen in C5 (0.8 M NaH2PO4, 0.8 M KH2PO4, 0.1M sodium HEPES pH 7.5)
Crystal Properties Matthews coefficient Solvent content 3.97 68.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.438 α = 90 b = 243.652 β = 90 c = 76.059 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2016-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9786 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.71 78.34 97.74 0.1238 10.44 5.7 78048
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.71 2.807 98.32 0.8111 0.7 2.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.71 78.34 74118 3927 97.73 0.1965 0.1943 0.2382 0.2383 RANDOM 56.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 0.3 0.12
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.286 r_dihedral_angle_2_deg 37.002 r_sphericity_bonded 24.727 r_dihedral_angle_4_deg 15.004 r_dihedral_angle_3_deg 13.351 r_dihedral_angle_1_deg 6.83 r_angle_refined_deg 0.861 r_angle_other_deg 0.698 r_rigid_bond_restr 0.576 r_chiral_restr 0.039
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.286 r_dihedral_angle_2_deg 37.002 r_sphericity_bonded 24.727 r_dihedral_angle_4_deg 15.004 r_dihedral_angle_3_deg 13.351 r_dihedral_angle_1_deg 6.83 r_angle_refined_deg 0.861 r_angle_other_deg 0.698 r_rigid_bond_restr 0.576 r_chiral_restr 0.039 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11933 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 260
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction HKL-2000 data reduction AutoSol phasing