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Ferric murine neuroglobin F106A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q1F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 1.6 M ammonium sulfate, 0.1 M MES pH 6.5, 10% 1,4-dioxane
Crystal Properties Matthews coefficient Solvent content 2.48 50.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.733 α = 90 b = 87.733 β = 90 c = 113.625 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 1 33.6 10.4 15824
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 0.872
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Q1F 1.8 45.54 15044 780 99.91 0.15507 0.15224 0.1545 0.20918 0.206 RANDOM 39.499
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.15 -0.15 0.47
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.578 r_dihedral_angle_2_deg 28.189 r_sphericity_bonded 20.509 r_dihedral_angle_3_deg 20.187 r_dihedral_angle_4_deg 19.106 r_dihedral_angle_1_deg 5.027 r_rigid_bond_restr 4.765 r_angle_refined_deg 1.97 r_angle_other_deg 0.962 r_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.578 r_dihedral_angle_2_deg 28.189 r_sphericity_bonded 20.509 r_dihedral_angle_3_deg 20.187 r_dihedral_angle_4_deg 19.106 r_dihedral_angle_1_deg 5.027 r_rigid_bond_restr 4.765 r_angle_refined_deg 1.97 r_angle_other_deg 0.962 r_chiral_restr 0.134 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1194 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing