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Human PFKFB3 in complex with a N-Aryl 6-Aminoquinoxaline inhibitor 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 2% Tacsimate, pH 7.0; 5% 2-propanol; 0.1M imidazole; 8% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.91 68.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.129 α = 90 b = 103.129 β = 90 c = 254.438 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 47.79 99.8 0.103 0.108 0.999 17.07 10.523 37392 49.429
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.42 98.8 0.982 1.04 0.67 2.09 9.182
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.28 47.79 35895 1496 99.76 0.2023 0.2008 0.2074 0.2385 0.2372 RANDOM 45.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.15 -0.3 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.448 r_dihedral_angle_3_deg 16.444 r_dihedral_angle_4_deg 14.751 r_dihedral_angle_1_deg 5.949 r_angle_refined_deg 1.594 r_angle_other_deg 0.754 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.448 r_dihedral_angle_3_deg 16.444 r_dihedral_angle_4_deg 14.751 r_dihedral_angle_1_deg 5.949 r_angle_refined_deg 1.594 r_angle_other_deg 0.754 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3506 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction