SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM 15N_13C_2H PD-L1-CD, 60 mM DMPG, 85 mM DHPC90% H2O/10% D2O20 mM6.01 Pa300Bruker AVANCE 600
33D HNCO0.5 mM 15N_13C_2H PD-L1-CD, 60 mM DMPG, 85 mM DHPC90% H2O/10% D2O20 mM6.01 Pa300Bruker AVANCE 600
43D HNCA0.5 mM 15N_13C_2H PD-L1-CD, 60 mM DMPG, 85 mM DHPC90% H2O/10% D2O20 mM6.01 Pa300Bruker AVANCE 600
53D HN(CO)CA0.5 mM 15N_13C_2H PD-L1-CD, 60 mM DMPG, 85 mM DHPC90% H2O/10% D2O20 mM6.01 Pa300Bruker AVANCE 600
73D HNCACO0.5 mM 15N_13C_2H PD-L1-CD, 60 mM DMPG, 85 mM DHPC90% H2O/10% D2O20 mM6.01 Pa300Bruker AVANCE 600
63D HNCACB0.5 mM 15N_13C_2H PD-L1-CD, 60 mM DMPG, 85 mM DHPC90% H2O/10% D2O20 mM6.01 Pa300Bruker AVANCE 600
93D 1H-15N NOESY0.5 mM 15N_13C PD-L1-CD, 60 mM 2H DMPG, 85 mM 2H DHPC90% H2O/10% D2O20 mM6.01 Pa300Varian DD2 800
83D 1H-13C NOESY0.5 mM 15N_13C PD-L1-CD, 60 mM 2H DMPG, 85 mM 2H DHPC90% H2O/10% D2O20 mM6.01 Pa300Varian DD2 800
102D 1H-13C HSQC0.5 mM 15N_13C PD-L1-CD, 60 mM 2H DMPG, 85 mM 2H DHPC90% H2O/10% D2O20 mM6.01 Pa300Varian DD2 800
113D 1H-15N NOESY for lipid NOE0.5 mM 15N_2H PD-L1-CD, 60 mM POPG, 85 mM 2H DHPC90% H2O/10% D2O20 mM6.01 Pa300Varian DD2 800
123D HCCH-TOCSY0.5 mM 15N_13C PD-L1-CD, 60 mM 2H DMPG, 85 mM 2H DHPC90% H2O/10% D2O20 mM6.01 Pa300Varian DD2 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2VarianDD2800
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.5.5Bruker Biospin
2data analysisNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentSparkyGoddard
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
6peak pickingSparkyGoddard