6LMR
Solution structure of cold shock domain and ssDNA complex
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
2 | 2D 1H-13C HSQC aliphatic | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
3 | 3D HNCA | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
4 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
5 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
6 | 4D NOESY | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
7 | 3D filtered NOEST | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
8 | 2D 13C/15N filtered TOCSY | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
9 | 2D 13C/15N filtered NOESY | 1 mM [U-100% 13C; U-100% 15N] csd | 90% H2O/10% D2O | 50 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (medoid) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | Sparky | Goddard | |
4 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | chemical shift assignment | Sparky | Goddard | |
7 | peak picking | Sparky | Goddard |