6LV4

Co- Carbonic Anhydrase II pH 11.0 20 atm CO2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP112931.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
2.141.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.358α = 90
b = 41.458β = 104.02
c = 72.307γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2702019-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 7A (6B, 6C1)0.9793PAL/PLS7A (6B, 6C1)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.23094.60.0580.0620.0230.99831.87.672173
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2291.20.4240.4550.1650.9225.67.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5YUK1.23072158369994.5940.1140.11250.139413.542
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.1160.015-0.111-0.011
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free40.976
r_dihedral_angle_2_deg34.742
r_dihedral_angle_4_deg23.27
r_sphericity_bonded13.279
r_dihedral_angle_3_deg11.944
r_dihedral_angle_1_deg7.033
r_rigid_bond_restr6.207
r_lrange_it5.699
r_lrange_other4.897
r_scangle_it3.635
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free40.976
r_dihedral_angle_2_deg34.742
r_dihedral_angle_4_deg23.27
r_sphericity_bonded13.279
r_dihedral_angle_3_deg11.944
r_dihedral_angle_1_deg7.033
r_rigid_bond_restr6.207
r_lrange_it5.699
r_lrange_other4.897
r_scangle_it3.635
r_scangle_other3.625
r_scbond_it3.189
r_scbond_other3.186
r_mcangle_other3.039
r_mcangle_it3.026
r_mcbond_it2.562
r_angle_refined_deg2.358
r_mcbond_other2.27
r_angle_other_deg1.187
r_symmetry_nbd_refined0.31
r_nbd_refined0.305
r_symmetry_xyhbond_nbd_other0.302
r_nbd_other0.256
r_metal_ion_refined0.214
r_xyhbond_nbd_refined0.206
r_chiral_restr0.193
r_symmetry_nbd_other0.187
r_nbtor_refined0.185
r_symmetry_xyhbond_nbd_refined0.166
r_symmetry_nbtor_other0.087
r_bond_refined_d0.028
r_gen_planes_refined0.014
r_bond_other_d0.003
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2049
Nucleic Acid Atoms
Solvent Atoms333
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing