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Structure of L509V CAO1 - growth condition 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281.15 33% w/v sodium polyacrylate
0.1 M HEPES pH 6
Crystal Properties Matthews coefficient Solvent content 2.8 56.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.21 α = 90 b = 101.21 β = 90 c = 450.18 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 99.9 0.17 0.998 10 12.9 146769
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.28 99.7 2.535 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5U8X 2.15 49.37 140279 6490 99.91 0.19884 0.1979 0.208 0.21832 0.2257 RANDOM 52.532
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 0.55 1.1 -3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.731 r_dihedral_angle_4_deg 15.264 r_dihedral_angle_3_deg 13.452 r_dihedral_angle_1_deg 7.521 r_long_range_B_refined 6.162 r_long_range_B_other 6.132 r_scangle_other 4.312 r_mcangle_other 3.676 r_mcangle_it 3.675 r_scbond_it 2.684
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.731 r_dihedral_angle_4_deg 15.264 r_dihedral_angle_3_deg 13.452 r_dihedral_angle_1_deg 7.521 r_long_range_B_refined 6.162 r_long_range_B_other 6.132 r_scangle_other 4.312 r_mcangle_other 3.676 r_mcangle_it 3.675 r_scbond_it 2.684 r_scbond_other 2.683 r_mcbond_it 2.423 r_mcbond_other 2.423 r_angle_refined_deg 1.227 r_angle_other_deg 1.115 r_chiral_restr 0.046 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15920 Nucleic Acid Atoms Solvent Atoms 730 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing