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Structure of human PARG complexed with JA2-4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 20% (w/v) PEG 3350, 0.1 M PCTP pH 7.5 and 0.15 M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.22 44.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.564 α = 90 b = 65.786 β = 95.21 c = 88.367 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2013-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 97.2 27 5.7 54208
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 23.84 51551 2751 96.85 0.1577 0.15577 0.1688 0.19316 0.2028 RANDOM 25.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.07 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.713 r_dihedral_angle_4_deg 17.596 r_dihedral_angle_3_deg 13.553 r_dihedral_angle_1_deg 7.071 r_long_range_B_refined 5.466 r_long_range_B_other 5.412 r_scangle_other 4.099 r_mcangle_it 2.786 r_mcangle_other 2.786 r_scbond_it 2.716
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.713 r_dihedral_angle_4_deg 17.596 r_dihedral_angle_3_deg 13.553 r_dihedral_angle_1_deg 7.071 r_long_range_B_refined 5.466 r_long_range_B_other 5.412 r_scangle_other 4.099 r_mcangle_it 2.786 r_mcangle_other 2.786 r_scbond_it 2.716 r_scbond_other 2.715 r_angle_refined_deg 1.87 r_mcbond_it 1.862 r_mcbond_other 1.861 r_angle_other_deg 1.163 r_chiral_restr 0.126 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4025 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing