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ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HWS experimental model PDB 3MT6
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.476 f_angle_d 0.649 f_chiral_restr 0.043 f_plane_restr 0.003 f_bond_d 0.002
Sample ClpX-ClpP-substrate-ATPrS
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument GATAN CRYOPLUNGE 3 Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 151652 Reported Resolution (Å) 4.12 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (3HWS, 3MT6) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 56
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI ARCTICA Minimum Defocus (nm) -800 Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 36000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND 4.1.12 MODEL FITTING UCSF Chimera MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT RELION 2 FINAL EULER ASSIGNMENT RELION 2 CLASSIFICATION RELION 2 RECONSTRUCTION RELION 2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION