☰ Navigation Tabs
Crystal structure of human DHODH in complex with BAY 2402234
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 2.3 M NH4SO4, 0.1 M Na-acetate, 30% Glycerol
Crystal Properties Matthews coefficient Solvent content 3.67 66.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.659 α = 90 b = 90.659 β = 90 c = 122.501 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 50 99.6 0.118 0.999 14.89 11 89320
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.52 48.29 87219 2100 99.6 0.15203 0.15152 0.17324 0.1697 RANDOM 23.278
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.08 0.16 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.838 r_sphericity_free 24.422 r_dihedral_angle_4_deg 17.475 r_dihedral_angle_3_deg 11.206 r_dihedral_angle_1_deg 5.71 r_sphericity_bonded 4.766 r_long_range_B_refined 2.598 r_long_range_B_other 2.263 r_scangle_other 1.93 r_rigid_bond_restr 1.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.838 r_sphericity_free 24.422 r_dihedral_angle_4_deg 17.475 r_dihedral_angle_3_deg 11.206 r_dihedral_angle_1_deg 5.71 r_sphericity_bonded 4.766 r_long_range_B_refined 2.598 r_long_range_B_other 2.263 r_scangle_other 1.93 r_rigid_bond_restr 1.793 r_scbond_it 1.695 r_scbond_other 1.694 r_mcangle_other 1.594 r_mcangle_it 1.593 r_angle_refined_deg 1.446 r_mcbond_it 1.342 r_mcbond_other 1.319 r_angle_other_deg 0.955 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2768 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing