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LXRbeta ligand binding domain in comlpex with small molecule inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 Unknown.
Crystal Properties Matthews coefficient Solvent content 3.65 66.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.086 α = 90 b = 125.086 β = 90 c = 137.054 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2009-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 20 99.8 16.56 6.6 30616
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.81 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.81 20 30612 761 99.801 0.254 0.2532 0.2486 0.2798 0.2746 71.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.225 1.612 3.225 -10.461
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.331 r_dihedral_angle_3_deg 19.274 r_dihedral_angle_4_deg 15.54 r_lrange_other 10.059 r_lrange_it 9.975 r_scangle_other 9.671 r_scangle_it 9.504 r_scbond_other 7.224 r_scbond_it 7.097 r_mcangle_other 4.343
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.331 r_dihedral_angle_3_deg 19.274 r_dihedral_angle_4_deg 15.54 r_lrange_other 10.059 r_lrange_it 9.975 r_scangle_other 9.671 r_scangle_it 9.504 r_scbond_other 7.224 r_scbond_it 7.097 r_mcangle_other 4.343 r_mcangle_it 4.328 r_angle_other_deg 4.095 r_mcbond_it 3.883 r_mcbond_other 3.783 r_dihedral_angle_1_deg 2.039 r_angle_refined_deg 1.593 r_nbd_other 0.236 r_symmetry_nbd_other 0.233 r_nbd_refined 0.16 r_symmetry_nbd_refined 0.158 r_nbtor_refined 0.154 r_ncsr_local_group_1 0.122 r_ncsr_local_group_2 0.121 r_ncsr_local_group_3 0.116 r_symmetry_nbtor_other 0.099 r_chiral_restr 0.08 r_xyhbond_nbd_refined 0.068 r_bond_refined_d 0.012 r_gen_planes_other 0.006 r_symmetry_xyhbond_nbd_refined 0.006 r_gen_planes_refined 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5742 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing