6TI5
A New Structural Model of Abeta(1-40) Fibrils
SOLID-STATE NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 15N-13C NCA | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 2 | 2D 15N-13C NCO | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 3 | 3D NCACX | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 4 | 3D NCOCX | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 5 | 3D CANCO | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 6 | 2D 13C-13C DARR (<100 ms) | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 7 | 2D 15N-13C PAIN | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| 8 | 2D 13C-13C DARR/PDSD (>100 ms) | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE II 700 | ||
| 9 | 2D 13C-13C PAR (10-15 ms) | 0 | 8.5 | 1 atm | 283 | Bruker AVANCE III 850 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 700 |
| 2 | Bruker | AVANCE III | 850 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | HADDOCK | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | Top 4 Structures From HADDOCK |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 4 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | TopSpin | Bruker Biospin | |
| 2 | chemical shift assignment | CARA | Keller and Wuthrich | |
| 3 | chemical shift assignment | Sparky | Goddard | |
| 4 | structure calculation | HADDOCK | Bonvin | |
