6TKO
Phosphorylated turkey beta1 adrenoceptor with bound agonist formoterol coupled to arrestin-2 in lipid nanodisc.
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 15.3097 |
f_angle_d | 0.4114 |
f_chiral_restr | 0.0392 |
f_plane_restr | 0.0017 |
f_bond_d | 0.0015 |
Sample |
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Formoterol-bound beta1-adrenoceptor coupled to beta-arrestin-1 stabilised by Fab30. |
Sample Components |
Beta-1 adrenergic receptor |
Beta-arrestin-1 |
Fab30 heavy chain |
Fab30 light chain |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | Blotted for 2-3 seconds before plunging. Liquid ethane maintained at 92.15 K. |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 403991 |
Reported Resolution (Å) | 3.3 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | Half maps were locally filtered between refinement iterations using SIDESPLITTER, an adaptation of the LAFTER algorithm that maintains gold-standard s ... |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
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Id | 1 (6IBL, 4JQI, 4JQI, 4JQI, 4JQI) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | OTHER | ||||
Refinement Target | Correlation coefficient | ||||
Overall B Value | 80.6 | ||||
Fitting Procedure | |||||
Details | Initial placement was done manually in Coot, followed by rigid-body refinement in PHENIX and jelly-body refinement in REFMAC5. Manual remodeling was p ... |
Data Acquisition | |||||||||
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Detector Type | GATAN K2 QUANTUM (4k x 4k) | GATAN K2 QUANTUM (4k x 4k) | |||||||
Electron Dose (electrons/Å**2) | 50 | 45 |
Imaging Experiment | 1 | 2 |
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Date of Experiment | ||
Temperature (Kelvin) | ||
Microscope Model | FEI TITAN KRIOS | FEI TITAN KRIOS |
Minimum Defocus (nm) | 1200 | 1200 |
Maximum Defocus (nm) | 3000 | 3000 |
Minimum Tilt Angle (degrees) | ||
Maximum Tilt Angle (degrees) | ||
Nominal CS | 2.7 | 2.7 |
Imaging Mode | BRIGHT FIELD | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 105000 | 130000 |
Calibrated Magnification | ||
Source | FIELD EMISSION GUN | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 | 300 |
Imaging Details | Data collected with a stage-tilt of 30deg; two non-overlapping exposures per hole and multi-hole image-shift data acquisition strategies (3x3 holes per stage shift). | Data collected with a stage-tilt of 30deg; two non-overlapping exposures per hole using image-shift. |
EM Software | ||
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Task | Software Package | Version |
IMAGE ACQUISITION | SerialEM | 3.8.0 beta |
CTF CORRECTION | Warp | 1.0.6 |
CTF CORRECTION | RELION | 3.1 |
MODEL FITTING | Coot | 0.8.9.2 |
IMAGE ACQUISITION | EPU | 2.3.0.79 |
INITIAL EULER ASSIGNMENT | RELION | 3.0.7 |
FINAL EULER ASSIGNMENT | RELION | 3.1 |
RECONSTRUCTION | RELION | 3.1 |
MODEL REFINEMENT | PHENIX | 1.17.1-3660 |
MODEL REFINEMENT | REFMAC | 5 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 10161197 |