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Crystal Structure of Teicoplanin Aglycone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 293 teicoplanine=10mg/ml
sodium acetate 1.2M,
sodium cacodylate 100mM
Crystal Properties Matthews coefficient Solvent content 1.76 30.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.722 α = 90 b = 13.113 β = 123.34 c = 21.717 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.7293 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.767 18.143 88 0.133 0.137 0.034 0.998 12.8 14.9 9030
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.77 0.79 28.9 0.677 0.726 0.256 0.797 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 0.767 18.143 8642 388 87.78 0.0972 0.0966 0.1013 0.1143 0.1191 RANDOM 3.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.03 -0.13 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.38 r_rigid_bond_restr 4.705 r_angle_refined_deg 2.153 r_angle_other_deg 1.159 r_chiral_restr 0.195 r_gen_planes_refined 0.048 r_bond_refined_d 0.041 r_bond_other_d 0.011 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling Sir2014 phasing