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Structure of native gp41 derived peptide fusion inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293.15 PEG 3350, ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.42 49.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.706 α = 90 b = 44.706 β = 90 c = 208.857 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 69.7 99.9 0.048 0.997 6.5 13.5 14813
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 0.887 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.45 69.619 14813 690 99.852 0.237 0.2338 0.2336 0.2983 0.2989 32.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.672 1.836 3.672 -11.911
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.197 r_dihedral_angle_3_deg 13.36 r_dihedral_angle_4_deg 13.302 r_scbond_other 7.69 r_scbond_it 7.68 r_rigid_bond_restr 7.605 r_scangle_it 7.323 r_scangle_other 7.315 r_lrange_it 6.603 r_lrange_other 6.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.197 r_dihedral_angle_3_deg 13.36 r_dihedral_angle_4_deg 13.302 r_scbond_other 7.69 r_scbond_it 7.68 r_rigid_bond_restr 7.605 r_scangle_it 7.323 r_scangle_other 7.315 r_lrange_it 6.603 r_lrange_other 6.33 r_mcangle_it 4.708 r_mcangle_other 4.701 r_mcbond_it 3.705 r_mcbond_other 3.702 r_dihedral_angle_1_deg 3.632 r_angle_refined_deg 1.501 r_angle_other_deg 1.45 r_nbd_refined 0.308 r_symmetry_nbd_other 0.241 r_nbd_other 0.222 r_xyhbond_nbd_refined 0.208 r_symmetry_nbd_refined 0.199 r_symmetry_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.169 r_symmetry_nbtor_other 0.092 r_symmetry_xyhbond_nbd_other 0.09 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 512 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling ACORN phasing