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Plasmodium vivax N-myristoyltransferase with bound indazole inhibitor IMP-917
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.2 M AS, 25% PEG 3350, 0.1 M Bis-Tris pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.22 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.472 α = 90 b = 121.655 β = 90 c = 178.371 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 49 99.9 0.105 10.4 6.5 181592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 100 0.96 1.9 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.55 49 181478 9126 99.882 0.166 0.1645 0.1645 0.1982 0.1982 17.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.108 0.181
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.612 r_dihedral_angle_4_deg 15.02 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_1_deg 6.306 r_lrange_it 4.974 r_scangle_it 3.368 r_scbond_it 2.294 r_mcangle_it 2.196 r_angle_refined_deg 1.733 r_mcbond_it 1.443
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.612 r_dihedral_angle_4_deg 15.02 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_1_deg 6.306 r_lrange_it 4.974 r_scangle_it 3.368 r_scbond_it 2.294 r_mcangle_it 2.196 r_angle_refined_deg 1.733 r_mcbond_it 1.443 r_nbtor_refined 0.316 r_nbd_refined 0.21 r_symmetry_xyhbond_nbd_refined 0.138 r_symmetry_nbd_refined 0.132 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.122 r_gen_planes_refined 0.012 r_bond_refined_d 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9401 Nucleic Acid Atoms Solvent Atoms 1666 Heterogen Atoms 315
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing