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CutR Screw, form 1 with 41.9 angstrom pitch
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6XPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 298 10% (w/v) PEG 3000, 200mM sodium chloride and 100 mM sodium phosphate dibasic/Citric acid pH 4.2
Crystal Properties Matthews coefficient Solvent content 1.74 29.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.83 α = 90 b = 61.83 β = 90 c = 41.93 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 53.546 99.4 0.113 0.119 0.999 15.46 9.512 2305 60.631
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 95.8 0.954 1.009 0.722 2.22 9.379
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6XPH 2.8 53.546 2305 231 99.353 0.234 0.2308 0.2315 0.2669 0.266 61.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.548 -0.774 -1.548 5.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.714 r_dihedral_angle_3_deg 15.204 r_dihedral_angle_4_deg 10.332 r_lrange_other 6.303 r_lrange_it 6.299 r_dihedral_angle_1_deg 5.762 r_mcangle_it 3.867 r_mcangle_other 3.867 r_scangle_other 3.214 r_scangle_it 3.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.714 r_dihedral_angle_3_deg 15.204 r_dihedral_angle_4_deg 10.332 r_lrange_other 6.303 r_lrange_it 6.299 r_dihedral_angle_1_deg 5.762 r_mcangle_it 3.867 r_mcangle_other 3.867 r_scangle_other 3.214 r_scangle_it 3.213 r_mcbond_it 2.205 r_mcbond_other 2.194 r_scbond_it 1.79 r_scbond_other 1.785 r_angle_refined_deg 1.234 r_angle_other_deg 1.04 r_symmetry_xyhbond_nbd_refined 0.219 r_nbd_refined 0.168 r_nbd_other 0.162 r_symmetry_nbd_other 0.161 r_nbtor_refined 0.141 r_symmetry_nbtor_other 0.106 r_symmetry_nbd_refined 0.1 r_xyhbond_nbd_refined 0.073 r_chiral_restr 0.03 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 734 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction