☰ Navigation Tabs
CutR Screw, form 2 with 33.8 angstrom pitch
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6XPK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.2M potassium sodium tartrate tetrahydrate, 0.1M Bis-Tris propane, 8.52% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.55 20.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.91 α = 90 b = 64.91 β = 90 c = 33.78 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.979180 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 56.214 99.3 0.236 0.268 0.992 4.63 4.579 1286 81.695
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.5 99.5 1.337 1.51 0.511 0.98 4.543
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6XPK 3.3 56.214 1280 151 99.533 0.225 0.2193 0.2052 0.2654 0.2385 123.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -50.17 -50.17 100.34
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 40.001 r_lrange_it 39.99 r_dihedral_angle_2_deg 35.01 r_scangle_it 29.577 r_scangle_other 29.559 r_mcangle_it 28.386 r_mcangle_other 28.377 r_scbond_other 20.006 r_scbond_it 19.99 r_mcbond_it 19.982
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 40.001 r_lrange_it 39.99 r_dihedral_angle_2_deg 35.01 r_scangle_it 29.577 r_scangle_other 29.559 r_mcangle_it 28.386 r_mcangle_other 28.377 r_scbond_other 20.006 r_scbond_it 19.99 r_mcbond_it 19.982 r_mcbond_other 19.955 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_4_deg 9.338 r_dihedral_angle_1_deg 6.26 r_angle_refined_deg 1.306 r_angle_other_deg 1.069 r_symmetry_xyhbond_nbd_refined 0.217 r_symmetry_nbd_refined 0.197 r_nbd_other 0.185 r_symmetry_nbd_other 0.159 r_nbd_refined 0.153 r_nbtor_refined 0.144 r_xyhbond_nbd_refined 0.077 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.037 r_ext_dist_refined_d 0.011 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 720 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction