☰ Navigation Tabs
Constitutive decay element CDE1 from human 3'UTR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 350 uM CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 2 2D 1H-13C HSQC 350 uM CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 3 3D HCCH-TOCSY 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 700 4 fwHCC-TOCSY-CCH-E.COSY 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 5 3D HCP 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 6 3D HCN 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 7 2D gamma HCN 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 800 8 2D PFIDS 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 25 mM potassium phosphate buffer 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800 2 Bruker AVANCE III 600 3 Bruker AVANCE III 700
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CNS 1.2 Brunger A. T. et.al. 2 peak picking Sparky 3.2 Goddard 3 chemical shift assignment Sparky 3.2 Goddard