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Crystal structure of FAP after illumination at 100K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YRU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 281 PEG 4000 25-40%, Na citrate 100 mM, spermidine 10mM
Crystal Properties Matthews coefficient Solvent content 3.01 59.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.96 α = 90 b = 103.86 β = 90 c = 156.3 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2018-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97372 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 86.5 100 0.106 0.116 0.998 11.62 6.585 54600 34.131
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 100 0.78 0.849 0.724 2.23 6.525
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6YRU 1.94 86 54459 2828 99.96 0.167 0.1651 0.2033 0.2025 29.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.984 0.631 -1.615
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.16 r_dihedral_angle_4_deg 16.441 r_dihedral_angle_3_deg 14.333 r_lrange_it 12.909 r_lrange_other 12.39 r_dihedral_angle_1_deg 7.441 r_scangle_it 5.02 r_scangle_other 5.02 r_scbond_it 3.416 r_scbond_other 3.416
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.16 r_dihedral_angle_4_deg 16.441 r_dihedral_angle_3_deg 14.333 r_lrange_it 12.909 r_lrange_other 12.39 r_dihedral_angle_1_deg 7.441 r_scangle_it 5.02 r_scangle_other 5.02 r_scbond_it 3.416 r_scbond_other 3.416 r_mcangle_it 3.372 r_mcangle_other 3.372 r_mcbond_it 2.452 r_mcbond_other 2.45 r_angle_refined_deg 1.697 r_angle_other_deg 1.443 r_symmetry_nbd_refined 0.29 r_symmetry_xyhbond_nbd_refined 0.255 r_nbd_other 0.228 r_xyhbond_nbd_refined 0.222 r_nbd_refined 0.207 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.164 r_symmetry_xyhbond_nbd_other 0.091 r_chiral_restr 0.084 r_symmetry_nbtor_other 0.082 r_gen_planes_refined 0.012 r_bond_refined_d 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4267 Nucleic Acid Atoms Solvent Atoms 524 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing