☰ Navigation Tabs
Crystal structure of FAP R451A in the dark at 100K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YRU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 281 PEG 4000 25-40%, Na citrate 100 mM, spermidine 10mM
Crystal Properties Matthews coefficient Solvent content 2.65 53.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.95 α = 90 b = 60.82 β = 90 c = 180.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2018-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97625 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 86 99.5 0.134 0.15 0.996 8.56 4.848 46463 33.757
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.09 99 1.01 1.131 0.568 1.44 4.871
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6YRU 1.97 49.375 46460 2425 99.448 0.184 0.182 0.1903 0.2287 0.236 33.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.225 1.164 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.659 r_dihedral_angle_4_deg 16.682 r_dihedral_angle_3_deg 14.028 r_dihedral_angle_1_deg 7.718 r_lrange_it 6.57 r_lrange_other 6.496 r_scangle_it 4.611 r_scangle_other 4.61 r_mcangle_other 3.552 r_mcangle_it 3.551
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.659 r_dihedral_angle_4_deg 16.682 r_dihedral_angle_3_deg 14.028 r_dihedral_angle_1_deg 7.718 r_lrange_it 6.57 r_lrange_other 6.496 r_scangle_it 4.611 r_scangle_other 4.61 r_mcangle_other 3.552 r_mcangle_it 3.551 r_scbond_it 3.054 r_scbond_other 3.054 r_mcbond_it 2.552 r_mcbond_other 2.544 r_angle_refined_deg 1.618 r_angle_other_deg 1.332 r_nbd_other 0.223 r_nbd_refined 0.196 r_symmetry_nbd_other 0.189 r_xyhbond_nbd_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.163 r_symmetry_nbd_refined 0.152 r_symmetry_xyhbond_nbd_other 0.09 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4192 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms 93
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing