☰ Navigation Tabs
Structure of a novel LPMO from Phytophthora infestans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 20mM Tris pH 7.0, 22% Polyethylene Glycol (PEG) 3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.293 α = 83.91 b = 45.458 β = 71.85 c = 53.687 γ = 83.78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.916 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.01 28.79 92.4 0.048 0.057 0.03 0.998 8.9 3.3 156702
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.01 1.03 80.9 0.68 0.856 0.509 0.589 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.01 28.79 148984 7636 92.34 0.1441 0.143 0.1519 0.164 0.1711 RANDOM 11.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.07 0.29 0.31 -0.15 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.508 r_dihedral_angle_4_deg 15.647 r_dihedral_angle_3_deg 11.436 r_dihedral_angle_1_deg 7.409 r_rigid_bond_restr 2.716 r_angle_refined_deg 1.957 r_angle_other_deg 1.602 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.508 r_dihedral_angle_4_deg 15.647 r_dihedral_angle_3_deg 11.436 r_dihedral_angle_1_deg 7.409 r_rigid_bond_restr 2.716 r_angle_refined_deg 1.957 r_angle_other_deg 1.602 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2683 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction xia2 data reduction Fragon phasing