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Structure of Unliganded MgGH51 a-L-Arabinofuranosidase Crystal Type 3 Collected at 2.75 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 10 mg/mL MgGH51 in 10 mM NaOAc pH 5.5, 100 mM NaCl mixed 2:1 with 1.8 M (NH4)2SO4, 0.1 M NaOAc, pH 5-6, 35% glycerol
Crystal Properties Matthews coefficient Solvent content 3.37 63.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.171 α = 90 b = 84.171 β = 90 c = 257.347 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 2M 2019-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 2.755 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 257.35 84.4 0.012 0.999 35.1 70.2 74070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.8 90.5 0.142 0.91 5.7 21.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.795 80.128 73955 3570 84.529 0.145 0.1438 0.1438 0.1784 0.1785 19.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.389 0.389 -0.778
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.417 r_dihedral_angle_4_deg 16.855 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 7.071 r_lrange_it 5.181 r_lrange_other 4.853 r_scangle_it 4.009 r_scangle_other 4.008 r_scbond_it 2.806 r_scbond_other 2.805
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.417 r_dihedral_angle_4_deg 16.855 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 7.071 r_lrange_it 5.181 r_lrange_other 4.853 r_scangle_it 4.009 r_scangle_other 4.008 r_scbond_it 2.806 r_scbond_other 2.805 r_mcangle_it 2.137 r_mcangle_other 2.137 r_angle_refined_deg 1.792 r_mcbond_it 1.588 r_mcbond_other 1.585 r_angle_other_deg 1.514 r_symmetry_xyhbond_nbd_other 0.481 r_xyhbond_nbd_refined 0.282 r_nbd_refined 0.231 r_nbd_other 0.196 r_symmetry_xyhbond_nbd_refined 0.184 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.174 r_symmetry_nbd_refined 0.114 r_chiral_restr 0.097 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4790 Nucleic Acid Atoms Solvent Atoms 751 Heterogen Atoms 285
Software Software Software Name Purpose REFMAC refinement xia2 data processing Aimless data scaling CRANK2 phasing