The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer dsRNA
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 100 uM [U-13C; U-15N] N-NTD, 100 uM RNA (5'-R(P*CP*AP*CP*UP*GP*AP*C)-3'), 100 uM RNA (5'-R(P*GP*UP*CP*AP*GP*UP*G)-3'), 20 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 70 mM | 5.5 | 1 atm | 298 | Bruker AVANCE III HD 850 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III HD | 850 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | HADDOCK | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 30 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure calculation | HADDOCK | Bonvin | |
