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The crystal structure of gene product PA4063 from Pseudomonas aeruginosa in complex with Au(I) for phasing
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 ammonium sulfate 2.5-3M, MPD 1%
Crystal Properties Matthews coefficient Solvent content 3.82 67.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.632 α = 90 b = 122.632 β = 90 c = 102.644 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 47.16 93.7 0.083 0.09 0.035 0.999 23.1 12.6 22698
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 1.383 1.502 0.582 0.767 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.7 46.252 22658 1086 93.713 0.196 0.1943 0.2371 0.2129 74.927
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.244 0.622 1.244 -4.036
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.087 r_dihedral_angle_3_deg 18.058 r_lrange_other 15.39 r_lrange_it 15.388 r_scangle_it 12.918 r_scangle_other 12.899 r_dihedral_angle_4_deg 12.449 r_mcangle_other 9.658 r_mcangle_it 9.656 r_scbond_it 8.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.087 r_dihedral_angle_3_deg 18.058 r_lrange_other 15.39 r_lrange_it 15.388 r_scangle_it 12.918 r_scangle_other 12.899 r_dihedral_angle_4_deg 12.449 r_mcangle_other 9.658 r_mcangle_it 9.656 r_scbond_it 8.601 r_scbond_other 8.599 r_dihedral_angle_1_deg 7.157 r_mcbond_it 6.927 r_mcbond_other 6.889 r_angle_refined_deg 1.632 r_angle_other_deg 1.222 r_symmetry_nbd_refined 0.237 r_nbd_refined 0.219 r_symmetry_xyhbond_nbd_refined 0.219 r_nbd_other 0.213 r_symmetry_nbd_other 0.174 r_xyhbond_nbd_refined 0.154 r_nbtor_refined 0.153 r_ncsr_local_group_2 0.129 r_ncsr_local_group_1 0.128 r_ncsr_local_group_3 0.112 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3045 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data reduction XDS data processing XDS data scaling AutoSol phasing