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Structure of EstD11 in complex with Fluorescein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 291 3.2M Sodium formate + 0.1M citric acid pH 5
Crystal Properties Matthews coefficient Solvent content 2.24 45.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.176 α = 90 b = 81.201 β = 90 c = 147.227 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 48.18 97.6 0.099 0.051 0.998 9.5 4.4 26303
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36 99.3 1.205 0.627 0.509 1.1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7AT0 2.28 45.83 24960 1304 96.78 0.21 0.2086 0.2173 0.2385 0.2452 RANDOM 58.178
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.82 -0.44 3.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.007 r_dihedral_angle_4_deg 22.767 r_dihedral_angle_3_deg 17.33 r_dihedral_angle_1_deg 5.852 r_angle_refined_deg 1.38 r_angle_other_deg 1.18 r_chiral_restr 0.06 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.007 r_dihedral_angle_4_deg 22.767 r_dihedral_angle_3_deg 17.33 r_dihedral_angle_1_deg 5.852 r_angle_refined_deg 1.38 r_angle_other_deg 1.18 r_chiral_restr 0.06 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3985 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing